| Title | Summary | |
| FREE Desktop and Web-based IUPAC Naming software from ACD (04-07-2000)(Free) | SummaryPage |
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| AutoNom 2.1: a naming program(Free) | SummaryPage |
| Chemical Structure Drawing Software(Free) | SummaryPage |
| ChemSketch 4.5(Free) | SummaryPage |
| ChemVis project and demos (Chemical Visualization on the Internet) | SummaryPage |
| Home Page For RasMol and OpenRasMol(Free) | SummaryPage |
| Improving the quality of published chemical names with nomenclature software(Free) | SummaryPage |
| Interactive depiction of SMILES(Free) | SummaryPage |
| ISIS/Draw 2.3(Free) | SummaryPage |
| IUPAC Nomenclature of Organic Chemistry(Free) | SummaryPage |
| KineMage: viewer for Brookhaven Protein Data Bank files((Free) | SummaryPage |
| VCCLAB (Virtual Computational Chemistry Laboratory) | SummaryPage |
| WebMolecules: 3D visualization of molecules(Free) | SummaryPage |
| World Wide Molecular Matrix | SummaryPage |
|
| ChemIntosh | SummaryPage |
| ChemOffice Net 5.0(Free) | SummaryPage |
| CORINA: Generation of High-Quality 3D Molecular Models, get 1000 3D structure by CORINA for free | SummaryPage |
| KnowItAll Academic Edition(Free) | SummaryPage |
| KnowItAll Informatics System 2.0 | SummaryPage |
| MolScript(Free) | SummaryPage |
| Web-based Chemical Computation and Visualization Services (Torvs Research Team) | SummaryPage |
|
| 3D Graphics/Virtual Reality | SummaryPage |
| 3D Molecular Designs | SummaryPage |
| 3DFS: 3D Flexible Searching System for Lead Discovery(Free) | SummaryPage |
| ACD Structure Drawing Applet (ACD/SDA)(Free) | SummaryPage |
| BABEL: Interconvert a number of file formats in molecular modeling | SummaryPage |
| Bioclipse | SummaryPage |
| Brief Introductions to Chemical Software(Free) | SummaryPage |
| CAMEO (Computer-Assisted Mechanistic Evaluation of Organic Reactions) | SummaryPage |
| ChemAxon (Marvin, JChem and more)(Partly Free) | SummaryPage |
| Chemical Entities of Biological Interest (ChEBI) | SummaryPage |
| Chemical Laboratory Management Program EXPEREACT | SummaryPage |
| Chemistry 4-D Draw | SummaryPage |
| Chemistry Development Kit (CDK) | SummaryPage |
| ChemMine(Free) | SummaryPage |
| chemoCR | SummaryPage |
| ChemPen3D | SummaryPage |
| ChemSymphony | SummaryPage |
| ChemTK Lite(Free) | SummaryPage |
| Converter of SMILES, InChI, Mol file to 2D drawing(Free) | SummaryPage |
| Data Book of Molecules | SummaryPage |
| Database of Simulated Molecular Motions (DSMM)(Free) | SummaryPage |
| DIMENSION 5 | SummaryPage |
| DRAGON | SummaryPage |
| Gezelter Lab | SummaryPage |
| GlassyChemistry(Partly Free) | SummaryPage |
| How to convert an InChI into a picture | SummaryPage |
| Interactive 2D to 3D Molecular Converter and Viewer at MolSoft, LLC(Free) | SummaryPage |
| IUPAC-NIST Chemical Identifier (INChI) | SummaryPage |
| JChemPaint, a Java 2 program for drawing 2D chemical structures(Free) | SummaryPage |
| JME Molecular Editor(Free) | SummaryPage |
| Jmol (a molecule viewer)(Free) | SummaryPage |
| JMV-a molecular viewer(Free) | SummaryPage |
| KnowItAll’s ChemWindow Edition | SummaryPage |
| MDL Chime: interactively displays 2D and 3D molecules in Web pages(Free) | SummaryPage |
| MODEL - Molecular Descriptor Lab | SummaryPage |
| MOLDA | SummaryPage |
| Molecular Networks GmbH | SummaryPage |
| MOLMOL (MOLecule analysis and MOLecule display)(Free) | SummaryPage |
| NCI-3D Database, NLM, NIH (213628 Records)(Free) | SummaryPage |
| Norgwyn Montgomery Software (molecular modeling and chemical database software) | SummaryPage |
| Online SMILES Translator and Structure File(Free) | SummaryPage |
| PharmTree | SummaryPage |
| RasMol: 3D Molecular Visualization Program(Free) | SummaryPage |
| SteinBlog - A molecular informatics weblog | SummaryPage |
| SYBYL/Base | SummaryPage |
| SynGen program for organic synthesis design(Partly Free) | SummaryPage |
| University of Berne: Reymond Group Cheminformatics Site | SummaryPage |
| VHMPT(Free) | SummaryPage |
| VMD (Visual Molecular Dynamics)(Free) | SummaryPage |
| voidoo(Free) | SummaryPage |
| VRML 2.0 viewer: Cosmo Player(Free) | SummaryPage |
| VRML File Creator for Chemical Structures(Free) | SummaryPage |
| WebLab ViewerLite(Free) | SummaryPage |
| XML-CML (Chemical Markup language) Software and Demo release | SummaryPage |
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| ChemVis: VRML Animator for Chemical Structures and More (06-20-2000) | SummaryPage |
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